Installation

A functioning python environment (>=3.8) is necessary to run this package.

This package uses the tensorflow (>= 2.8) and tensorflow-probability (>=0.16) packages. The GPU versions of these packages have not been tested with scCODA and are thus not recommended.

To install tascCODA via pip, call:

pip install tasccoda

To install tascCODA from source:

• Navigate to the directory you want tascCODA in

• Clone the repository from github:

  git clone https://github.com/bio-datascience/tascCODA
  

• Navigate to the root directory of scCODA:

  cd tascCODA
  

• Install dependencies:

  pip install -r requirements.txt
  

Import tascCODA in a Python session via:

import tasccoda