tascCODA
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Contents
About tascCODA
Data structure
The tascCODA model
Installation
API
Tutorials
tascCODA - Tree-aggregated compositional analysis of high-throughput sequencing data
tascCODA
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Index
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Index
A
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C
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D
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G
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M
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S
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T
A
attrs() (tasccoda.tree_results.CAResult_tree property)
C
CAResult_tree (class in tasccoda.tree_results)
collapse_singularities() (in module tasccoda.tree_utils)
complete_alpha_df() (tasccoda.tree_results.CAResult_tree method)
complete_beta_df() (tasccoda.tree_results.CAResult_tree method)
complete_node_df() (tasccoda.tree_results.CAResult_tree method)
CompositionalAnalysisTree (class in tasccoda.tree_ana)
D
df2newick() (in module tasccoda.tree_utils)
draw_tree_effects() (tasccoda.tree_results.CAResult_tree method)
G
get_A() (in module tasccoda.tree_utils)
get_chains_after_burnin() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
get_significant_results() (tasccoda.tree_results.CAResult_tree method)
get_y_hat() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
M
make_result() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
module
tasccoda
S
sample_hmc() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
sample_hmc_da() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
sample_nuts() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
sampling() (tasccoda.tree_agg_model_sslasso.TreeModelSSLasso method)
summary() (tasccoda.tree_results.CAResult_tree method)
summary_extended() (tasccoda.tree_results.CAResult_tree method)
summary_prepare() (tasccoda.tree_results.CAResult_tree method)
T
tasccoda
module
TreeModelSSLasso (class in tasccoda.tree_agg_model_sslasso)